3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10134

Details:

PFam ID : PF10134

PFam Domain Description : Replication initiator protein A

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 172

Average sequence length: 220.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10134	F0RQM8_DEIPM_11_231	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10134	D4G923_RIEPU_4_242	100

Sequence based PCA Plot of the family - PF10134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=18
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay