3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01199

Details:

PFam ID : PF01199

PFam Domain Description : Ribosomal protein L34e

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 195

Average sequence length: 86.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01199	A2YRD5_ORYSI_1_66	11.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01199	A2DT99_TRIVA_1_95	100

Sequence based PCA Plot of the family - PF01199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=11
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay