3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05132

Details:

PFam ID : PF05132

PFam Domain Description : RNA polymerase III RPC4

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 160

Average sequence length: 126.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05132	A0CFC2_PARTE_132_259	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05132	D8QDQ0_SCHCM_260_424	100

Sequence based PCA Plot of the family - PF05132 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay