3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07972

Details:

PFam ID : PF07972

PFam Domain Description : Riboflavin kinase

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 319

Average sequence length: 117.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07972	Q6YRG1_ONYPE_1_44	64.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07972	B3XQG9_LACRE_8_146	100

Sequence based PCA Plot of the family - PF07972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=23
Motif2 Start=102 Length=8
Motif3 Start=119 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay