3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03215

Details:

PFam ID : PF03215

PFam Domain Description : Rad17 cell cycle checkpoint protein

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 234

Average sequence length: 321.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03215	A2EUN1_TRIVA_138_243	75.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03215	D4FDF1_9LACO_7_91	100

Sequence based PCA Plot of the family - PF03215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=262 Length=8
Motif2 Start=242 Length=8
Motif3 Start=15 Length=8
Motif4 Start=169 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay