3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11002

Details:

PFam ID : PF11002

PFam Domain Description : RFPL defining motif (RDM)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 10

Average sequence length: 50.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11002	A4RJZ5_MAGO7_175_355	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11002	F1RMN1_PIG_59_100	100

Sequence based PCA Plot of the family - PF11002 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay