3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05045

Details:

PFam ID : PF05045

PFam Domain Description : Rhamnan synthesis protein F

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 201

Average sequence length: 287.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05045	E8MW62_BIFL1_41_547	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05045	C4Z2N4_EUBE2_34_360	100

Sequence based PCA Plot of the family - PF05045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=190 Length=8
Motif3 Start=101 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay