3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01247

Details:

PFam ID : PF01247

PFam Domain Description : Ribosomal protein L35Ae

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 187

Average sequence length: 91.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01247	B2CP08_OSTNU_1_30	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01247	A9BL13_HEMAN_12_103	100

Sequence based PCA Plot of the family - PF01247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=2 Length=21
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay