3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09202

Details:

PFam ID : PF09202

PFam Domain Description : Rio2, N-terminal

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 186

Average sequence length: 79.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09202	Q8TXJ9_METKA_7_91	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09202	Q8TXJ9_METKA_7_91	100

Sequence based PCA Plot of the family - PF09202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay