3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08658

Details:

PFam ID : PF08658

PFam Domain Description : Rad54 N terminal

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 98

Average sequence length: 165.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08658	C4Y510_CLAL4_23_284	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08658	C4Y510_CLAL4_23_284	100

Sequence based PCA Plot of the family - PF08658 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay