3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00935

Details:

PFam ID : PF00935

PFam Domain Description : Ribosomal protein L44

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 175

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00935	Q74MN7_NANEQ_20_105	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00935	Q74MN7_NANEQ_20_105	97.7

Sequence based PCA Plot of the family - PF00935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=11
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay