3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10680

Details:

PFam ID : PF10680

PFam Domain Description : RNA polymerase I specific transcription initiation factor

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 51

Average sequence length: 70.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10680	E7KT19_YEASL_44_113	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10680	Q2HCV0_CHAGB_139_234	98

Sequence based PCA Plot of the family - PF10680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay