3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13445

Details:

PFam ID : PF13445

PFam Domain Description : RING-type zinc-finger, LisH dimerisation motif

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 396

Average sequence length: 53.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13445	A2X2H1_ORYSI_769_837	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13445	E0VVI1_PEDHC_17_80	94.4

Sequence based PCA Plot of the family - PF13445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=8
Motif2 Start=22 Length=17
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay