3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10426

Details:

PFam ID : PF10426

PFam Domain Description : Recombination-activating protein 1 zinc-finger domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 365

Average sequence length: 29.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10426	A8DL42_9SAUR_313_330	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10426	A8DL42_9SAUR_313_330	95.8

Sequence based PCA Plot of the family - PF10426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay