3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04555

Details:

PFam ID : PF04555

PFam Domain Description : Restriction endonuclease XhoI

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 33

Average sequence length: 168.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04555	A1WFA1_VEREI_28_125	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04555	E8JLP0_9ACTO_27_223	100

Sequence based PCA Plot of the family - PF04555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8
Motif3 Start=87 Length=8
Motif4 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay