3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12678

Details:

PFam ID : PF12678

PFam Domain Description : RING-H2 zinc finger

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 275

Average sequence length: 75.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12678	B8AHA4_ORYSI_83_146	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12678	E6QXP0_CRYGW_2_119	100

Sequence based PCA Plot of the family - PF12678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=43 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay