3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00253

Details:

PFam ID : PF00253

PFam Domain Description : Ribosomal protein S14p/S29e

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 1159

Average sequence length: 53.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00253	E9P1D3_CYAPA_44_98	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00253	F1AAL5_NYCOV_1_44	99.9

Sequence based PCA Plot of the family - PF00253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=33 Length=8
Motif3 Start=12 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay