3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12174

Details:

PFam ID : PF12174

PFam Domain Description : RCD1-SRO-TAF4 (RST) plant domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 62

Average sequence length: 66.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12174	Q6SJR1_ARATH_75_146	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12174	B9HDP5_POPTR_249_329	100

Sequence based PCA Plot of the family - PF12174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay