3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01137

Details:

PFam ID : PF01137

PFam Domain Description : RNA 3'-terminal phosphate cyclase

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 445

Average sequence length: 300.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01137	B7XMC4_ENTBH_26_213	71.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01137	B6HVN9_PENCW_16_487	100

Sequence based PCA Plot of the family - PF01137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=40 Length=8
Motif3 Start=178 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay