3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01876

Details:

PFam ID : PF01876

PFam Domain Description : RNase P subunit p30

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 236

Average sequence length: 139.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01876	Q2HDE3_CHAGB_283_316	50.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01876	C6Z550_9BACE_113_224	100

Sequence based PCA Plot of the family - PF01876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay