3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11707

Details:

PFam ID : PF11707

PFam Domain Description : Ribosome 60S biogenesis N-terminal

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 125

Average sequence length: 294.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11707	E0VNA6_PEDHC_56_378	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11707	C4YBW3_CLAL4_45_393	100

Sequence based PCA Plot of the family - PF11707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay