3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00573

Details:

PFam ID : PF00573

PFam Domain Description : Ribosomal protein L4/L1 family

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1409

Average sequence length: 191.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00573	E4XCX9_OIKDI_106_297	76.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00573	E3QG26_COLGM_21_73	100

Sequence based PCA Plot of the family - PF00573 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=97 Length=8
Motif2 Start=227 Length=8
Motif3 Start=1 Length=8
Motif4 Start=212 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay