3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00849

Details:

PFam ID : PF00849

PFam Domain Description : RNA pseudouridylate synthase

Number of Sequence in 50% Dataset : 666

Number of Sequence in Full Dataset : 6731

Average sequence length: 149.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00849	A4HI97_LEIBR_1_341	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00849	C8PKX0_9PROT_77_393	99.9

Sequence based PCA Plot of the family - PF00849 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay