3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10501

Details:

PFam ID : PF10501

PFam Domain Description : Ribosomal subunit 39S

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 88

Average sequence length: 108.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10501	B6K679_SCHJY_61_161	51.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10501	B8LZB6_TALSN_280_411	100

Sequence based PCA Plot of the family - PF10501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay