3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00886

Details:

PFam ID : PF00886

PFam Domain Description : Ribosomal protein S16

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 1055

Average sequence length: 59.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00886	A0BD97_PARTE_9_70	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00886	E3KM60_PUCGT_9_109	100

Sequence based PCA Plot of the family - PF00886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=17
Motif2 Start=71 Length=8
Motif3 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay