3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02867

Details:

PFam ID : PF02867

PFam Domain Description : Ribonucleotide reductase, barrel domain

Number of Sequence in 50% Dataset : 238

Number of Sequence in Full Dataset : 2100

Average sequence length: 378.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02867	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02867	D7MBH4_ARALL_183_291	99.6

Sequence based PCA Plot of the family - PF02867 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=444 Length=17
Motif2 Start=549 Length=14
Motif3 Start=90 Length=8
Motif4 Start=574 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay