3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13482

Details:

PFam ID : PF13482

PFam Domain Description : RNase_H superfamily

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 463

Average sequence length: 167.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13482	C0FP59_9FIRM_41_158	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13482	A2TX93_9FLAO_11_225	99.5

Sequence based PCA Plot of the family - PF13482 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=106 Length=8
Motif3 Start=196 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay