3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00329

Details:

PFam ID : PF00329

PFam Domain Description : Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 1327

Average sequence length: 105.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00329	D4IPD1_9BACT_32_134	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00329	C6PUG2_9CLOT_24_141	100

Sequence based PCA Plot of the family - PF00329 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=20
Motif2 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay