3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04992

Details:

PFam ID : PF04992

PFam Domain Description : RNA polymerase Rpb1, domain 6

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 603

Average sequence length: 148.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04992	C5K5V4_9ALVE_96_277	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04992	O04142_PORYE_803_1018	100

Sequence based PCA Plot of the family - PF04992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=161 Length=8
Motif3 Start=97 Length=11
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay