3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00415

Details:

PFam ID : PF00415

PFam Domain Description : Regulator of chromosome condensation (RCC1) repeat

Number of Sequence in 50% Dataset : 886

Number of Sequence in Full Dataset : 5321

Average sequence length: 51.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00415	D8LKE8_ECTSI_415_471	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00415	A9KSN7_CLOPH_387_445	100

Sequence based PCA Plot of the family - PF00415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=27
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay