3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01872

Details:

PFam ID : PF01872

PFam Domain Description : RibD C-terminal domain

Number of Sequence in 50% Dataset : 573

Number of Sequence in Full Dataset : 2917

Average sequence length: 188.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01872	C0D165_9CLOT_1_95	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01872	E9LUE3_9MICC_1_45	100

Sequence based PCA Plot of the family - PF01872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=240 Length=8
Motif2 Start=2 Length=14
Motif3 Start=211 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay