3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00327

Details:

PFam ID : PF00327

PFam Domain Description : Ribosomal protein L30p/L7e

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 1055

Average sequence length: 51.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00327	A6C5A5_9PLAN_2_177	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00327	B3T584_9ZZZZ_4_55	99.1

Sequence based PCA Plot of the family - PF00327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=23 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay