3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04603

Details:

PFam ID : PF04603

PFam Domain Description : Ran-interacting Mog1 protein

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 129

Average sequence length: 126.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04603	F1LWR8_RAT_1_39	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04603	Q5KDB8_CRYNE_7_170	100

Sequence based PCA Plot of the family - PF04603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=20
Motif2 Start=177 Length=11
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay