3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08777

Details:

PFam ID : PF08777

PFam Domain Description : RNA binding motif

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 116

Average sequence length: 98.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08777	B8BSR2_THAPS_311_431	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08777	B8BSR2_THAPS_311_431	100

Sequence based PCA Plot of the family - PF08777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=8
Motif3 Start=39 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay