3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06582

Details:

PFam ID : PF06582

PFam Domain Description : Repeat of unknown function (DUF1136)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 224

Average sequence length: 29.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06582	E3X1K5_ANODA_2295_2326	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06582	F1KQG0_ASCSU_1417_1441	99.1

Sequence based PCA Plot of the family - PF06582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay