3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08497

Details:

PFam ID : PF08497

PFam Domain Description : Radical SAM N-terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 361

Average sequence length: 314.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08497	A1CVN1_NEOFI_8_298	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08497	Q1NLD6_9DELT_8_314	100

Sequence based PCA Plot of the family - PF08497 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=8
Motif2 Start=4 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay