3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01776

Details:

PFam ID : PF01776

PFam Domain Description : Ribosomal L22e protein family

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 173

Average sequence length: 108.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01776	A5BNP4_VITVI_10_71	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01776	C6LRI0_GIAIB_10_122	100

Sequence based PCA Plot of the family - PF01776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=65 Length=17
Motif2 Start=8 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay