3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12623

Details:

PFam ID : PF12623

PFam Domain Description : RNA repair, ligase-Pnkp-associating, region of Hen1

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 65

Average sequence length: 238.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12623	D7B7L7_NOCDD_252_289	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12623	E3EDG5_PAEPS_1_238	100

Sequence based PCA Plot of the family - PF12623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay