3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04002

Details:

PFam ID : PF04002

PFam Domain Description : RadC-like JAB domain

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 1340

Average sequence length: 118.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04002	E6WL87_PANSA_25_104	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04002	C2MB02_9PORP_131_264	100

Sequence based PCA Plot of the family - PF04002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay