3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07592

Details:

PFam ID : PF07592

PFam Domain Description : Rhodopirellula transposase DDE domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 115

Average sequence length: 184.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07592	Q64ZP3_BACFR_1_109	24.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07592	D8F259_9DELT_39_122	90.3

Sequence based PCA Plot of the family - PF07592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=304 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay