3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01780

Details:

PFam ID : PF01780

PFam Domain Description : Ribosomal L37ae protein family

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 218

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01780	D3QBR2_STANL_1_40	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01780	Q3LWL0_BIGNA_1_74	99.5

Sequence based PCA Plot of the family - PF01780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=19 Length=11
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay