3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08454

Details:

PFam ID : PF08454

PFam Domain Description : RyR and IP3R Homology associated

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 125

Average sequence length: 108.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08454	E9GM04_DAPPU_1_49	56.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08454	Q22DA4_TETTH_2597_2725	100

Sequence based PCA Plot of the family - PF08454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay