3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05748

Details:

PFam ID : PF05748

PFam Domain Description : Rubella membrane glycoprotein E1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 231

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05748	D5KJ87_RUBV_1_215	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05748	D8L929_RUBV_1_478	100

Sequence based PCA Plot of the family - PF05748 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=110 Length=8
Motif3 Start=37 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay