3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04423

Details:

PFam ID : PF04423

PFam Domain Description : Rad50 zinc hook motif

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 112

Average sequence length: 52.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04423	Q752D9_ASHGO_650_704	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04423	Q7NCW4_GLOVI_469_529	90.9

Sequence based PCA Plot of the family - PF04423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay