3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10174

Details:

PFam ID : PF10174

PFam Domain Description : RIM-binding protein of the cytomatrix active zone

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 105

Average sequence length: 270.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10174	E7F1B0_DANRE_159_407	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10174	D6WT34_TRICA_192_727	100

Sequence based PCA Plot of the family - PF10174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=14
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay