3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05498

Details:

PFam ID : PF05498

PFam Domain Description : Rapid ALkalinization Factor (RALF)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 185

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05498	B8B4T4_ORYSI_19_74	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05498	Q9LH43_ARATH_55_115	99.4

Sequence based PCA Plot of the family - PF05498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay