3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10727

Details:

PFam ID : PF10727

PFam Domain Description : Rossmann-like domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 253

Average sequence length: 116.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10727	B2V1L7_CLOBA_2_80	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10727	C1F767_ACIC5_10_151	99.6

Sequence based PCA Plot of the family - PF10727 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay