3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13893

Details:

PFam ID : PF13893

PFam Domain Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Number of Sequence in 50% Dataset : 382

Number of Sequence in Full Dataset : 1456

Average sequence length: 55.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13893	D7T6I2_VITVI_89_158	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13893	B8CA43_THAPS_678_730	99.7

Sequence based PCA Plot of the family - PF13893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay