3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08069

Details:

PFam ID : PF08069

PFam Domain Description : Ribosomal S13/S15 N-terminal domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 220

Average sequence length: 57.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08069	Q40939_BIGNA_1_61	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08069	D8VG49_9NEOP_1_32	99.0

Sequence based PCA Plot of the family - PF08069 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=51 Length=11
Motif2 Start=1 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay