3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04607

Details:

PFam ID : PF04607

PFam Domain Description : Region found in RelA / SpoT proteins

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 1658

Average sequence length: 116.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04607	E8L4G1_9RHIZ_36_170	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04607	B0MSD1_9BACT_7_60	99.8

Sequence based PCA Plot of the family - PF04607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=167 Length=8
Motif3 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay